Puerto Rico Sun Oil v. EPA ( 1993 )


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  •                 UNITED STATES COURT OF APPEALS
    FOR THE FIRST CIRCUIT
    No. 92-2359
    PUERTO RICO SUN OIL COMPANY,
    Petitioner,
    v.
    UNITED STATES ENVIRONMENTAL PROTECTION AGENCY,
    Respondent.
    ON PETITION FOR REVIEW OF AN ORDER OF
    THE UNITED STATES ENVIRONMENTAL PROTECTION AGENCY
    Before
    Selya, Cyr and Boudin,
    Circuit Judges.
    Robert Brager with whom Richard S.  Davis, Joseph C. Stanko,  Jr.,
    Patricia Ross  McCubbin, Beveridge & Diamond,  P.C., Leonardo Andrade-
    Lugo, Jose A. Cepeda-Rodriguez,  Carlos A. Rodriguez-Vidal, Eli Matos-
    Alicea, Goldman Antonetti Cordova & Axtmayer and Edward J. Ciechon Jr.
    were on brief for petitioner.
    Alan  D.  Greenberg, Environment  &  Natural  Resources  Division,
    Environmental Defense Section, Department  of Justice, with whom Myles
    E.  Flint,  Acting Assistant  Attorney General,  Randolph L.  Hill and
    Meyer Scolnick,  Assistant Regional Counsel,  Environmental Protection
    Agency, were on brief for respondent.
    October 21, 1993
    BOUDIN,   Circuit   Judge.      In  August   1990,   the
    Environmental Protection Agency issued a  pollution discharge
    permit  to Puerto Rico Sun  Oil Company ("the  Company").  In
    doing so  EPA complied  with the substantive  requirements of
    the governing  statute and  the procedures  set forth  in the
    statute and EPA regulations.  Only the result gives cause for
    concern,  and that  concern is  not allayed  by  the agency's
    explanation for its decision.  In our judgment, the result is
    so  odd that either  the EPA has abused  its discretion or it
    has  explained  itself  so   poorly  as  to  require  further
    justification.  On  either view, we must vacate  the agency's
    order adopting the permit and remand for further proceedings.
    I. THE FACTS
    The  Clean  Water  Act,  33  U.S.C.     1251,  et  seq.,
    prohibits  the  discharge   into  protected  waters  of   any
    pollutant by any  person, id.    1311(a), unless a  discharge
    permit  has  been  secured  from  EPA.   Id.     1342.    The
    permitting regime is  a hybrid one in which  both EPA and the
    counterpart  state  agency play  a  role.   The  precise role
    depends on whether EPA has delegated permit issuing authority
    to the state; but no such delegation is present here.  Puerto
    Rico is  treated as a state  for purposes of the  Clean Water
    Act, id.   1362(3), and its local agency is the Environmental
    Quality Board ("EQB").
    -2-
    To obtain a permit, the applicant must satisfy a variety
    of substantive requirements under the Clean Water Act but, in
    addition, no EPA permit  can issue unless the state  in which
    the  discharge  will occur  gives  its  own approval  (called
    "certification") or waives its right to  do so.  33 U.S.C.
    1341(a)(1).   Further,  the  state  certification may  impose
    discharge  limitations  or requirements  more  stringent than
    federal law requires,  and those  more stringent  obligations
    are  incorporated into  the  federal permit  as  a matter  of
    course.  See generally  United States v. Marathon Development
    Corp.,  
    867 F.2d 96
    , 99  (1st  Cir. 1989)  (describing state
    role).  What  lies at the heart of this  case is EQB's effort
    to  impose,  and then  back  away from,  such  more stringent
    obligations.
    For some years before this case began, the  Company held
    a  discharge permit for its  oil refining facility at Yabucoa
    Bay,  Puerto Rico,  where it  discharges pollutants  from two
    different sources.  On May 27, 1988, the Company submitted to
    EPA an application to  renew the permit for its facility.  On
    October  31,  1988, EPA  forwarded  the  application to  EQB,
    requesting that  a draft certification be  prepared promptly.
    EPA also warned EQB that under EPA regulations, Puerto Rico's
    right to impose obligations  by certification would be waived
    if a  final certification were  not received  within 60  days
    -3-
    after EPA sent a copy of a (yet to be  prepared) draft permit
    to EQB.  40 C.F.R.   124.53(c)(3) (60 day time limit).1
    On   January  25,   1989,   EQB  released   a  tentative
    certification--essentially a draft document  that facilitates
    public  comment  on  the  proposed  state  certification  and
    proposed  federal permit.   The  draft certification  in this
    case probably came as a surprise to the Company.  The earlier
    permit had employed a "mixing  zone" analysis in setting  the
    pollution limitations for  the Company's discharged effluent;
    the draft certificate did not include a mixing zone analysis.
    The difference, which is  central to this case, needs  a word
    of explanation.
    A discharge permit under the Clean Water Act may include
    several  types  of  requirements.     One  set  concerns  the
    technology used to limit pollution;  another, pertinent here,
    requires that  the amount of specified  pollutants not exceed
    certain percentage levels.   In theory, the percentage levels
    could  be  measured in  the  effluent  itself--such as  storm
    runoff or waste  water--just as  it drains  into the  stream,
    river  or  bay which  is protected  by  the Clean  Water Act;
    alternatively,  it could be measured at the edge of a defined
    1The Clean Water Act provides  that the state waives its
    certification  rights if  it  fails to  issue  or to  deny  a
    certification  "within a  reasonable  period  of time  (which
    shall  not exceed one year) after receipt of such request . .
    . ."  33 U.S.C.   1341(a(1).
    -4-
    area of the receiving  body of water after the  pollutant has
    been diluted by that water.
    Such  a defined  area is  called a  mixing zone,  and it
    appears that  measuring pollutants at the edge  of the mixing
    zone is widespread in the application of the Clean Water Act.
    According to an EPA publication, "[w]hether to establish such
    a mixing zone policy is a matter of State discretion."   EPA,
    Mixing  Zones--Water Quality Standards  Criteria Summaries: A
    Compilation  of  State/Federal  Criteria 2  (September  1988)
    ("Mixing Zones").   Practically  every state and  Puerto Rico
    have adopted mixing zone criteria, 
    id.,
     although the criteria
    appear  to differ widely.  Id. at 70-78 (Puerto Rico criteria
    as  of  1988).   The  mixing  zone  concept  is described  in
    Marathon Oil Co. v. EPA, 
    830 F.2d 1346
    , 1349 (5th Cir. 1987),
    which concludes with the  observation that "the `mixing zone'
    determination is basically a cost-benefit judgment on a given
    set  of   environmental  facts,  rather  than   any  sort  of
    `scientific' determination."  
    Id. at 1351
    .
    When in January 1989  EQB issued its draft certification
    for the Company's requested permit, the EQB was reformulating
    its mixing zone criteria.   EQB's draft certification for the
    Company  neither  continued  in  force the  old  mixing  zone
    criteria temporarily nor made  the certificate subject to the
    new  criteria still  under development.   Instead,  the draft
    certification simply set further pollutant limitations which,
    -5-
    absent  the  mixing  zone  analysis, apply  directly  to  the
    effluent  as it enters  the receiving waters.   Mixing Zones,
    supra,  at 2  ("If no  such mixing  zone is  recognized by  a
    State, then the waters must meet the criteria at the point of
    discharge.").
    The  next event was EPA's release on August 11, 1989, of
    a draft permit  and request  for public comment.   The  draft
    permit   incorporated   the   requirements   of   the   draft
    certification issued by EQB and therefore used no mixing zone
    analysis.  Although issuance  of the draft permit  meant that
    final EQB certification  was now due in 60 days,  40 C.F.R.
    124.53(c)(2),  EQB   apparently  paid  no  attention  to  the
    deadline or to EPA's earlier warning that failure to meet the
    deadline  would   waive  Puerto  Rico's  right   to  certify.
    Nevertheless,  in  October   1989  EPA  told  the   Company's
    attorneys that  it was  extending the  comment period on  the
    draft permit  "indefinitely" while awaiting  the EQB's  final
    certification.  When the  certification arrived, said EPA, it
    would set a "prompt" close to the comment period.
    On  July 24,  1990, almost  a  year after  receiving the
    draft permit,  EQB issued  what it  called its  "final" water
    quality  certification  for the  Company,  again  eschewing a
    mixing  zone analysis.  Both the timing and substance of this
    action  are puzzling because, only four  days before, on July
    20, 1990, EQB had promulgated new regulations to be effective
    -6-
    on  August  20, 1990,  adopting a  new method  of determining
    mixing zones.    But  if  EQB's  behavior  was  slothful  and
    careless, EPA's reaction was even stranger.
    At this  point the  EQB's final certification  must have
    appeared a  probable candidate for administrative or judicial
    revision in Puerto Rico.  EQB had used a mixing zone analysis
    in the past and was proposing to do so in the future, and the
    use of such an analysis was likely to be significant; indeed,
    the Company later represented,  and EPA has not disputed  the
    claim, that its refinery cannot operate if forced to meet the
    pollution  standards  without  the  help  of  a  mixing  zone
    analysis.   Yet just as the  Company moved to correct the EQB
    certification, EPA  moved even more swiftly to  adopt a final
    permit based  on the  EQB certificate  that omitted  a mixing
    zone analysis.
    The  chronology can be compressed.   On August 17, 1990,
    the  Company asked  EQB to  reconsider its  certification and
    include  a mixing  zone analysis.   On  August 21,  1990, EPA
    published  a  new  draft  permit  incorporating  EQB's  final
    certification requirements, and it  offered 30 days to submit
    comments.  On September 7, 1990, EQB wrote to EPA saying that
    it was evaluating  the Company's comments on  reconsideration
    and that it might  alter its certification.  On  September 10
    and on September  21, 1990,  the Company asked  EPA to  delay
    action  on  the  permit to  allow  the  EQB  to complete  its
    -7-
    reconsideration.   On September 28, 1990, EPA  issued a final
    permit, based  on the  then July 1990  EQB certification  and
    without provision for a mixing zone.
    On November 7,  1990, the Company  sought administrative
    review within  EPA, an  action that automatically  stayed the
    new permit, 40 C.F.R.   124.15(b)(2), and left the old one in
    force  on a  temporary  basis.   On  November 28,  1990,  EQB
    adopted  a  resolution  staying  its   certification  pending
    reconsideration and announcing, for  the benefit of EPA, that
    the  certificate    was  "not  to  become  final"  until  the
    reconsideration was  completed.  In February  1991, EQB wrote
    formally  to  EPA  stating  that the  certificate  should  be
    treated  as not final and  urging EPA to  leave the Company's
    previous permit in  effect for the time being.   In June 1992
    EPA's  regional administrator  issued a  decision reaffirming
    the new permit without a mixing zone provision but continuing
    the stay of the new  permit pending a further  administrative
    appeal.
    In  July 1992,  the Company  duly appealed  the regional
    administrator's  decision  to  EPA's   Environmental  Appeals
    Board, urging a number of  the arguments discussed below, and
    making one further contention of note: the Company said  that
    unless EPA modified the permit  on direct review, the Company
    would  likely   be  unable  get  the   mixing  zone  analysis
    incorporated  into the permit through subsequent proceedings.
    -8-
    The reason,  said the Company, was  "the probable application
    of  the anti-backsliding policy"  of the Clean  Water Act, 33
    U.S.C.   1342(o).  On October 26, 1992, the EPA Environmental
    Appeals  Board  issued a  lengthy  decision refusing  further
    review.  The  Company's appeal  to this court  followed.   33
    U.S.C.   1369(b)(1)(F).
    -9-
    II. DISCUSSION
    Faced with  what may  be a disastrous  outcome from  its
    standpoint, the Company  has offered this court  a variety of
    procedural  challenges to EPA.  They range from a broad claim
    that  EQB's  final  certification  was  ineffective  (because
    Puerto  Rico's time  to  certify had  expired)  to a  trivial
    complaint  that the EPA did  not allow a  15-day extension to
    the comment period at  one phase of the proceeding.  We think
    virtually  all  of  the  procedural claims  fail  and,  while
    addressing them at  the close  of the opinion,  we prefer  to
    begin by discussing EPA's central error.
    EPA's  action in adopting the permit in this case is not
    flawed by procedural  mistake.   On the contrary,  EPA did  a
    commendable  job of  dotting i's  and crossing  t's.   Nor is
    there any  violation of  substantive provisions of  the Clean
    Water Act;  for example,  nothing in that  statute explicitly
    requires EPA to use mixing zone analyses in its permits.  The
    problem  with  EPA's  decision  is simply  that  the  outcome
    appears  on its  face to  make no  sense.   We  say "appears"
    because  we cannot rule out the possibility that some further
    explanation could shore up the EPA's result.  Either way, the
    EPA's present action cannot stand.
    It may  come as  a surprise  that agency  decisions must
    make sense  to reviewing courts.   Agencies,  after all,  are
    normally entitled  to substantial deference so  long as their
    -10-
    decisions do not collide directly  with substantive statutory
    commands  and  so long  as  procedural  corners are  squarely
    turned.   This  deference is  especially marked  in technical
    areas.    But in  the  end an  agency  decision must  also be
    rational--technically speaking,  it must not be "arbitrary or
    capricious,"  Administrative   Procedure  Act,  5   U.S.C.
    706(2)(A)--and  that requirement  exists  even  in  technical
    areas of  regulation.  E.g., Public  Citizens Health Research
    Group, v. Tyson, 
    796 F.2d 1479
    , 1505 (D.C. Cir. 1986).   The
    requirement is not very hard to meet, but it has not been met
    here.
    The "arbitrary and capricious" concept, needless to say,
    is  not easy  to  encapsulate in  a  single list  of  rubrics
    because it embraces  a myriad of possible  faults and depends
    heavily upon the circumstances of the case.  Still, there are
    rules of thumb, e.g., Motor Vehicle Mfrs. Ass'n v. State Farm
    Mutual Ins. Co., 
    463 U.S. 29
    , 43 (1983) (listing  examples).
    In addressing  individual aspects of EPA's  decision, we cite
    to   those   requirements--discussion  of   relevant  issues,
    consistency  with  past  practice,  avoidance  of unexplained
    discrimination--that are pertinent to  EPA's decision in this
    case.
    On  the  surface  of  the  administrative   record,  the
    following  scene presents itself.  EQB,  having used a mixing
    zone  analysis in  past cases,  neglected to  include  such a
    -11-
    provision in its latest certification for this facility.  EQB
    had  previously used  a mixing  zone  analysis for  this very
    facility; and far from abandoning the concept, EQB was in the
    process  of revising  its  regulations to  prescribe such  an
    analysis  at the  very time  it was  preparing the  Company's
    certification.    Four  days   before  it  issued  the  final
    certification in this case, omitting a mixing zone provision,
    it formally promulgated its new mixing zone regulations.
    It is not clear  whether in August 1990 EPA  appreciated
    that  EQB  had  probably  misstepped.   The  Company's  brief
    implies   that   the  EPA,   having   obtained  EQB's   final
    certification, then  proceeded with sinister  speed--surely a
    rare  accusation  in  administrative  law--to  mousetrap  the
    Company by issuing a  final permit before EQB's certification
    could be revised.  An alternative explanation, to us entirely
    plausible,  is  that the  EPA's  patience with  EQB  had been
    exhausted  and  it wanted,  as it  had  warned almost  a year
    before, simply to get done with  the permit as soon as it had
    EQB's final certification.
    However this may be, both the Company and EQB made clear
    to  the EPA at once, and before the final permit issued, that
    reconsideration was  under way.  EPA published  its new draft
    permit for  comment in  August 1990;  and in  September 1990,
    before the EPA issued the final permit on September 28, 1990,
    EQB advised EPA  (on September 7)  that it was  reconsidering
    -12-
    its certification and might  alter it, and the  Company wrote
    letters (on September  10 and  21) begging the  EPA to  defer
    final  action until  the  EQB acted.    The EPA  nevertheless
    proceeded to  issue the final permit with  no explanation for
    its refusal to wait.
    Even  at this  stage, it  appears that  EPA was  free to
    correct the problem on administrative review.  There being no
    fixed  timetable, the  regional administrator  presumably had
    discretion to defer action  until EQB acted on the  Company's
    reconsideration request  and, if a mixing  zone analysis were
    adopted  by   EQB  in   a  revised  certification,   then  to
    incorporate  this revision into the new permit.  One of EPA's
    regulations, 40 C.F.R.   124.55(b), which is discussed below,
    seems to contemplate just such a situation.  During this same
    period EQB made crystal clear, by its resolution  of November
    28, 1990, and its formal letter of February 25, 1991, that it
    was planning to reexamine its certification and  did not want
    the  certification  treated  as   final.    Once  again,  EPA
    proceeded to reject the  pleas and reaffirm the  permit, sans
    mixing zone.
    EPA has now explained its  position at least three times
    administratively and for a  fourth time in this court.   Each
    time   EPA  deals  deftly   with  the   Company's  procedural
    objections  by showing  why  some regulation  allowed EPA  to
    await EQB's final certification, but to refuse to await EQB's
    -13-
    attempt to repair the certification, and allowed EPA to adopt
    EQB's certification, but to reject EQB's  retroactive attempt
    to brand  it as non-final.   The only thing that  is missing,
    among  this  array of  finely  wrought  explanations, is  any
    reason why the EPA should want to frustrate the EQB's clumsy,
    long-delayed but increasingly evident  desire to reconsider a
    mixing zone analysis for this permit.
    Assuredly, some explanation  is called  for. The  mixing
    zone analysis is not some freakish idea or whim of the Puerto
    Rico   authorities.     According   to  EPA's   Mixing  Zones
    publication, it is available for use in at least 49 states in
    varying situations; and the Company said that the refinery in
    question  cannot  operate  if   the  permit  limitations  are
    applied, without  a mixing zone  analysis, at the  point that
    the   effluent   enters   the   water.      Patently,   these
    considerations of  history and  practical effect would,  in a
    rational decision,  warrant at least some  discussion.  Motor
    Vehicle Mfrs. Ass'n, 
    463 U.S. at 43
     (agency may not "entirely
    fail[] to consider an important aspect of the problem").
    At oral  argument, we  inquired of  counsel representing
    the  EPA whether there were other situations in which EPA had
    refused  to  use a  mixing  zone analysis  despite  a state's
    desire that  such an analysis  be used.   Yes, we  were told,
    counsel for EPA knew of several such instances.  On rebuttal,
    the Company's counsel responded  that there were indeed other
    -14-
    instances but they were limited to  EPA's issuance of permits
    in Puerto  Rico, in the same  time frame as this  case and to
    other  applicants whose  situations  paralleled that  of  the
    Company.   If this is the situation  (counsel for EPA made no
    later effort  to respond), then  EPA's current posture  is in
    some  measure  at odds  with precedent.    Cf. Atchison,  T &
    S.F.R.R.  v. Wichita Bd. of  Trade, 
    412 U.S. 800
    , 808 (1973)
    ("departure from prior norms" must be explained).
    The point is not that EPA has some overriding obligation
    under the Clean Water Act to do whatever it is that the state
    wants to  do.  On the  contrary, EPA was entirely  free, once
    Puerto  Rico had  ignored  the clear  deadlines  for a  final
    certification,  to treat  the Commonwealth  as an  interested
    bystander with  no further  veto authority.   What  is beyond
    explanation,  or  at least  wholly  unexplained,  is why  EPA
    should be intent  on adopting half  of what the  Commonwealth
    wanted while systematically frustrating its attempt to secure
    the  other half.   The obligation, we  repeat, is not  one of
    deference to local authorities but of making sense.
    There  is  also in  this  case  an  element of  apparent
    irrational   discrimination.     See,  e.g.,   Green  Country
    Mobilephone,  Inc.  v. FCC,  
    765 F.2d 235
      (D.C.  Cir. 1985)
    (obligation to treat similar cases  similarly).  For all that
    appears,  similarly situated  facilities  in Puerto  Rico, if
    permitted for the first time next year, are likely to receive
    -15-
    permits including a mixing zone analysis.  Like facilities in
    other states, permitted in September 1990 at the same time as
    the  Company, probably  received the  benefit of  mixing zone
    analyses.   Only Puerto Rican facilities that  happened to be
    permitted or  re-permitted in  this strange "window,"  during
    which  EQB was  reformulating its  mixing zone  criteria, are
    left  out   in  the  cold--possibly  forever   if  the  anti-
    backsliding provisions apply.2
    Perhaps there is some explanation for EPA's action other
    than a mechanical desire to reach  a rapid conclusion without
    regard  to whether the result  is sound.   Indeed, we suspect
    that  there  is  an  explanation.    As  noted,  the  Company
    insinuates  that EPA  deliberately  took  advantage of  EQB's
    carelessness  to mousetrap  the Company  into standards  that
    could not  later be  relaxed because of  the anti-backsliding
    provisions  previously mentioned.    Such a  result would  at
    least explain what happened, although it is doubtful that the
    explanation,  if adopted  by EPA,  would commend itself  to a
    reviewing court.
    Or, there may  be more benign reasons for  EPA's action.
    Perhaps  the  Company's science  is  faulty  and very  slight
    adjustments  in  technology  would  permit  it  to  meet  the
    2Needless  to say,  we  do not  know  whether the  anti-
    backsliding  provisions  would  produce  this  result.    The
    provisions  are complicated  and contain  certain exceptions.
    33  U.S.C.   1342(o).  The Company's prediction is qualified,
    and EPA's brief is silent on this issue.
    -16-
    pollution limitations, and  improve the environment to  boot,
    without any mixing zone  analysis.  In all events,  until EPA
    emerges from  its fortress of  procedural-rule citations  and
    adopts  a  rationale for  its  action,  any speculations  are
    beside the point:  the  agency's decision cannot be supported
    on reasoning that the agency has not yet adopted.  See SEC v.
    Chenery Corp., 
    332 U.S. 194
    , 196 (1947).
    We turn now to the  Company's other arguments on  appeal
    because  some of them, if  adopted, would alter  the terms of
    the  remand.    The  main  thrust of  the  Company's  various
    arguments is  that, for  various procedural reasons,  EPA was
    not  entitled  to rely  on the  EQB  certification.   On this
    premise,  the  Company  argues   that  EPA  was  required  to
    formulate  its  own  permit  standards based  upon  the  real
    requirements of  Puerto Rico law, which  the Company believes
    requires the use  of a mixing zone analysis.  Since we reject
    the Company's premise of  procedural error, the further steps
    in the Company's argument need not concern us.
    The  Company's  broadest  procedural  argument  is  that
    Puerto Rico's final certification came too late and therefore
    could not furnish the  basis for EPA's own final  permit.  As
    already noted, the  Clean Water Act  required Puerto Rico  to
    provide  its  certificate,  or  announce a  decision  not  to
    certify,  within a  reasonable  time not  to exceed  one year
    after  the  application,  33  U.S.C.     1341(a)(1);  and  by
    -17-
    regulation EPA required  a certification  decision within  60
    days  of  the  issuance  of a  draft  permit.    40 C.F.R.
    124.53(c)(3).  Here, EQB apparently ignored both time limits,
    failing both to meet the statutory one-year deadline and  the
    regulation-based 60-day deadline.
    Under  the  statute and  the  regulation,  the price  of
    failing to meet the deadlines is that the state agency waives
    its right to  dictate permit  terms that go  beyond what  EPA
    would  do on its  own.   Based on  this waiver  language, the
    Company argues  that a  state certification issued  after the
    deadline is  without legal effect.   In reply EPA says  it is
    free  either to declare a  waiver or, instead,  to follow the
    course  taken  in  this  case  and  await  the  final, though
    belated, certification.   The statute itself  merely provides
    that  the state must act  within a reasonable  period, not to
    exceed  a  year, or  the  certification  requirement will  be
    deemed "waived."  33 U.S.C.   1341(a)(1).
    Although  we  are   provided  no  useful   precedent  or
    legislative  history, our  reading  of  the  statute  largely
    coincides with that of EPA.  The statutory time limit and the
    word  "waived" do not tell us the answer; Congress could have
    meant that  a state  certification issued after  the deadline
    had to  be ignored by EPA,  or it could have  meant only that
    EPA was  free to do so.   EPA interprets the  statute to mean
    the latter  and under  the Chevron doctrine,  Chevron U.S.A.,
    -18-
    Inc. v.  NRDC, 
    467 U.S. 837
     (1984), its view  is entitled to
    weight.  State of California v. FERC, 
    966 F.2d 1541
     (9th Cir.
    1992),  cited by  the Company  as holding  that the  deadline
    cannot be waived, holds no such thing.3
    Further,  EPA's  reading both  of  the  statute and  its
    regulation seems  to  us  a  sensibly flexible  one.    EPA's
    reading  gives it the practical  benefit of the state process
    even  if that benefit comes a little  late.  Indeed, where no
    one  complains  (e.g.,  because  the applicant  is  happy  to
    operate  under an  earlier permit),  it could  be pointlessly
    rigid to  insist  that EPA  begin  its own  calculations  the
    moment the certification deadline expires for the state.  The
    concern on the other side  is that without a deadline,  a new
    applicant could be left  dangling forever.  But we  think the
    courts have  adequate power  to assure that  flexibility does
    not become an excuse for permanent inaction.4
    3EPA's interpretation  of its  own 60-day  regulation is
    even  more   compelling  since  it   wrote  the   regulation.
    Gardebring v. Jenkins, 
    485 U.S. 415
    , 430 (1988)  In addition,
    agencies can  usually (although  not always) waive  their own
    procedural  regulations  even  where  there   is  no  express
    provision  for waiver.    American Farm  Lines v.  Black Ball
    Freight Service, 
    397 U.S. 532
    , 538 (1970).
    4See  Administrative Procedure  Act,  5 U.S.C.    706(1)
    (power to compel agency action  unduly delayed).  The  courts
    are normally deferential to  the agency in such cases.   See,
    e.g., Telecommunications Research & Action Center v. FCC, 
    750 F.2d 70
      (D.C. Cir.  1984).    Here, however,  Congress  has
    expressed its  intent that the state  proceeding be completed
    in a year.  If EPA wants to waive the state's failure to meet
    a deadline, and  wait longer for its certification,  we think
    that  the propriety of its deferral might be open to judicial
    -19-
    The   Company's   remaining   arguments   require   less
    discussion.  The claim that EQB's certification was not final
    when EPA adopted it is unpersuasive.  "Finality" is a concept
    with  several shades  of meaning  in administrative  law; but
    where, as here, the agency  itself (rather than a subordinate
    body)  has  spoken  and  has explicitly  labeled  its  action
    "final,"  we think that is enough, even though the agency may
    choose to reconsider or may  be reversed on judicial  review.
    The Company failed  to get  a stay of  the EQB  certification
    before EPA acted in reliance upon it.  We agree with EPA that
    the   subsequent  decision  of  EQB  to  re-characterize  its
    certification order as non-final cannot affect the procedural
    validity of EPA's decision to grant the permit.
    In fact, EPA has regulations that govern the effect of a
    state stay or modification of a certification after  a permit
    has issued.  The  pertinent regulation permits EPA's regional
    administrator under certain circumstances to  incorporate the
    modifications  into the  permit so  long as the  state agency
    stays  or modifies the old certificate and forwards a new one
    to  EPA as a  substitute.  40  C.F.R.   124.55(b).   But this
    regulation does not apply in this case because EQB never sent
    a substitute certificate to the EPA.
    The Company  relies upon a different  EPA regulation, 40
    C.F.R.   122.44(d)(3).  This provides in part that if a state
    review that is somewhat more searching than customary.
    -20-
    court or board  stays a certification,  EPA shall notify  the
    state  that  certification will  be  deemed  waived unless  a
    finally  effective  certificate  is  issued  within  60 days;
    absent such a new certification, the regulation says that EPA
    shall  impose  its  own  requirements  in  the  permit.    In
    agreement  with EPA, we read this regulation to apply only to
    stays that occur before EPA has issued its own permit.   Once
    again, the agency's reading of its own regulation is entitled
    to deference.  Gardebring, 
    485 U.S. at 430
    .  Its reading also
    has  the benefit  of making  this regulation,  governing pre-
    permit  stays,  dovetail  with  section  124.55(b), governing
    post-permit stays.
    In an attempt to bolster the importance of the EQB stay,
    the  Company reminds us of  the central role  that the states
    were intended to  play under the  Clean Water Act.   Yet that
    role is to be  played within the framework of  the procedures
    fixed by the statute and EPA regulations.   Indeed, precisely
    because   two  different   jurisdictions   are  expected   to
    collaborate  on  a  permit,  there  is  a  special  need  for
    compliance  with the rules  of the road.   Here, the EQB stay
    came  after  the  permit   and--strictly  from  a  procedural
    standpoint--EPA  was  entitled to  disregard  it,  unless and
    until  EPA's  regulation  governing  a  post-permit stay  was
    satisfied.
    -21-
    In  summing up, we stress  again that the  flaw in EPA's
    action   is  not  a  procedural  defect.    EPA's  result  is
    irrational, or  at least inadequately  explained, not because
    of  EQB's hapless stay, but  because of the  substance of the
    EPA's  permitting  decision.   To  restate  the gist  of  the
    matter, EPA has  failed to explain why  it makes sense, as  a
    matter  of substantive  policy,  to  frustrate Puerto  Rico's
    incipient  desire to use  the mixing  zone analysis,  and why
    those  companies who  fall  in this  "window" between  Puerto
    Rico's old and  new regulations  should alone  be denied  the
    benefits of  a  mixing analysis.    Those concerns  would  be
    virtually  the same  even  if EQB  had  never used  the  word
    "stay."5
    III. CONCLUSION
    In  framing the remand, we begin  by emphasizing what we
    have not decided.   Whether the final certification issued by
    the EQB in August  1989 is vulnerable to attack  under Puerto
    Rican  law, if not altered  by EQB on  reconsideration, is an
    issue not  before this  court.  Although  state certification
    provisions are incorporated into federal permits, review of a
    5We have not discussed the Company's separate claim that
    EPA abused its discretion by not extending the comment period
    for 15 days, as requested by the Company, to permit more time
    for comment  on technical  issues.  This  argument, summarily
    stated in a paragraph at  the end of the Company's brief,  is
    not seriously  supported and  is therefore not  preserved for
    review.  United States v. Zannino, 
    895 F.2d 1
    , 27 (1st Cir.),
    cert. denied, 
    494 U.S. 1082
     (1990).
    -22-
    state certification is a matter for  local courts.  Roosevelt
    Campobello Int'l Park Comm'n v. EPA, 
    684 F.2d 1041
    , (1st Cir.
    1982).   The apparent past  and future inclination  of EQB to
    employ mixing zone analyses is part of the background of this
    case, but nothing we have said should be taken to declare the
    law of Puerto Rico on this subject.
    Similarly, we  do not suggest that  mixing zone analysis
    has  a  sacrosanct  role under  the  Clean  Water  Act.   Our
    impression from EPA's own publication is that the use of such
    analysis is widespread.   But that  impression is subject  to
    correction.  In any  event, sound reasons may dictate  that a
    mixing  zone analysis not be used in certain cases or certain
    classes  of cases, despite a possible hint to the contrary in
    Marathon  Oil Co.,  
    830 F.2d at 1349
      ("By definition,  the
    effluent  itself  does  not  meet  water  quality  standards;
    otherwise, it would not be considered polluted.").  There may
    even be reasons why, apart  from EQB's procedural default,  a
    mixing zone analysis is improper in this case.
    All that we hold  here is that EPA's decision to issue a
    permit in  September 1990,  adopting EQB's  certification but
    refusing to await EQB's decision on reconsideration, produces
    a  result  that  on  the present  record  appears  manifestly
    arbitrary and  capricious.   If legitimate reasons  exist for
    such  an outcome,  then EPA is  free to provide  them and re-
    adopt the present permit (and the  Company in turn is free to
    -23-
    challenge those reasons and  that action by petitioning again
    for judicial  review).  EPA, EQB, and the Company may find it
    possible to chart a more constructive course and make further
    litigation unnecessary.
    The  EPA order adopting the permit at issue in this case
    is  vacated and  the matter  is remanded  to EPA  for further
    proceedings in accordance with this opinion.  Costs are taxed
    in favor of the petitioner.
    -24-